PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_48400.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 85aa    MW: 9766.08 Da    PI: 6.2294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_48400.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438e-142672395
                             .HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3 23 aeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                             +++h +gk+ ++ t tl++  + ++W+v    + ++    lt+GWkeF++a++L+ gD+v+Fkl+g++ f  +v+
  Rsa1.0_48400.1_g00001.1  2 FSKHiQGKT-NGNTWTLTSdATDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLEGSMVF--HVT 67
                             556645554.55577777658889999999..7777....************************998888..666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.3E-5172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872172IPR003340B3 DNA binding domain
CDDcd100176.82E-12269No hitNo description
PfamPF023625.8E-9764IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-15879IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-181181IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
FFSKHIQGKT NGNTWTLTSD ATDQTWQVIQ EERRLTRGWK EFAEAHDLRI GDIVIFKLEG  60
SMVFHVTPFG PSCCDIQYTS MLVVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895991e-125AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149649.19e-54PREDICTED: B3 domain-containing protein REM5-like
SwissprotO817784e-33REM9_ARATH; B3 domain-containing protein REM9
SwissprotQ8H2D07e-34REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A078H3S79e-52A0A078H3S7_BRANA; BnaA01g19720D protein
TrEMBLA0A078ILG91e-51A0A078ILG9_BRANA; BnaA10g28180D protein
TrEMBLM4DJU46e-52M4DJU4_BRARP; Uncharacterized protein
TrEMBLM4F5X71e-51M4F5X7_BRARP; Uncharacterized protein
TrEMBLM4F5X85e-52M4F5X8_BRARP; Uncharacterized protein
STRINGBra016772.1-P2e-51(Brassica rapa)
STRINGBra036483.1-P3e-51(Brassica rapa)
STRINGBra036486.1-P2e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-35B3 family protein